Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mma_0065Uncharacterized conserved protein. (506 aa)    
Predicted Functional Partners:
mma_0066
TonB-dependent receptor.
 
  
 0.961
mma_0067
Uncharacterized conserved protein.
  
    0.755
mma_0045
TonB-dependent siderophore receptor.
 
    0.588
parA1
Chromosome partitioning protein ParA.
       0.467
mma_3621
TonB-dependent receptor for iron transport.
 
    0.442
mma_0068
Uncharacterized conserved protein.
     
 0.436
mma_3619
TonB-dependent receptor for iron transport.
 
    0.407
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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