Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
betTHigh-affinity choline transport protein; Belongs to the BCCT transporter (TC 2.A.15) family. (505 aa)    
Predicted Functional Partners:
lemA1
LemA family protein.
       0.727
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
       0.547
mma_0206
Uncharacterized conserved protein.
       0.547
mma_0209
Zn-dependent protease with chaperone function.
       0.547
mma_2811
Glucose-methanol-choline oxidoreductase.
  
  
 0.477
betA
Choline dehydrogenase.
  
  
 0.477
mma_0204
Uncharacterized conserved protein; Predicted endonuclease distantly related to archaeal Holliday junction resolvase; Belongs to the UPF0102 family.
       0.437
mma_0203
Uncharacterized conserved protein.
       0.434
mma_3677
Uncharacterized conserved protein; Putative oxidoreductase.
  
  
 0.431
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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