Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ompR1Two-components system response regulator. (229 aa)    
Predicted Functional Partners:
mma_0215
Two-component sensor histidine kinase.
 
 
 0.917
mma_2830
Two-component sensor histidine kenase.
 
 
 0.860
mma_0216
Peptidoglycan binding protein.
 
     0.769
mma_3062
Two-component sensor kinase.
 
 
 0.723
mma_3512
Two-component sensor histidine kinase.
 
 
 0.693
mma_2921
Two-components system response regulator.
  
 
 0.691
mma_3229
Two component sensor histidine kinase protein.
  
   0.685
mma_2864
Sensor histidine kinase transcription regulator protein.
  
 
 0.682
czcS
Heavy metal sensor kinase; Member of a two-component regulatory system.
  
   0.676
colS2
Two-component system, sensor protein.
  
   0.665
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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