mma_0253 protein (Janthinobacterium sp. Marseille)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

mma_0253

ABC-type multidrug transport system, ATPase and permease components. (658 aa)

Predicted Functional Partners:

mma_0254

0.980

dnaK

0.673

mma_0810

0.577

hscA

0.552

mma_0252

0.546

dnaJ

0.528

thrS

0.507

atm1

0.467

mma_2582

0.434

mma_0251

0.421

Your Current Organism:

Janthinobacterium sp. Marseille

NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
atm1	mma_0253	mma_0277	mma_0253	ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components.	ABC-type multidrug transport system, ATPase and permease components.	0.467
atm1	mma_0254	mma_0277	mma_0254	ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components.	ABC-type multidrug transport system, ATPase and permease components.	0.454
dnaJ	dnaK	mma_2882	mma_2883	Molecular chaperone DnaJ (heat shock protein); Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent inter [...]	Molecular chaperone DnaK (Hsp70); Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.997
dnaJ	hscA	mma_2882	mma_1256	Molecular chaperone DnaJ (heat shock protein); Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent inter [...]	Molecular chaperone HscA (Hsc66); Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB.	0.986
dnaJ	mma_0253	mma_2882	mma_0253	Molecular chaperone DnaJ (heat shock protein); Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent inter [...]	ABC-type multidrug transport system, ATPase and permease components.	0.528
dnaJ	mma_0254	mma_2882	mma_0254	Molecular chaperone DnaJ (heat shock protein); Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent inter [...]	ABC-type multidrug transport system, ATPase and permease components.	0.478
dnaJ	mma_0810	mma_2882	mma_0810	Molecular chaperone DnaJ (heat shock protein); Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent inter [...]	Uncharacterized conserved protein; Putative ATPase.	0.550
dnaK	dnaJ	mma_2883	mma_2882	Molecular chaperone DnaK (Hsp70); Acts as a chaperone; Belongs to the heat shock protein 70 family.	Molecular chaperone DnaJ (heat shock protein); Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent inter [...]	0.997
dnaK	mma_0253	mma_2883	mma_0253	Molecular chaperone DnaK (Hsp70); Acts as a chaperone; Belongs to the heat shock protein 70 family.	ABC-type multidrug transport system, ATPase and permease components.	0.673
dnaK	mma_0254	mma_2883	mma_0254	Molecular chaperone DnaK (Hsp70); Acts as a chaperone; Belongs to the heat shock protein 70 family.	ABC-type multidrug transport system, ATPase and permease components.	0.580
dnaK	mma_0810	mma_2883	mma_0810	Molecular chaperone DnaK (Hsp70); Acts as a chaperone; Belongs to the heat shock protein 70 family.	Uncharacterized conserved protein; Putative ATPase.	0.747
dnaK	mma_2582	mma_2883	mma_2582	Molecular chaperone DnaK (Hsp70); Acts as a chaperone; Belongs to the heat shock protein 70 family.	ATPases of the AAA+ class.	0.454
dnaK	thrS	mma_2883	mma_1487	Molecular chaperone DnaK (Hsp70); Acts as a chaperone; Belongs to the heat shock protein 70 family.	threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr).	0.713
hscA	dnaJ	mma_1256	mma_2882	Molecular chaperone HscA (Hsc66); Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB.	Molecular chaperone DnaJ (heat shock protein); Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent inter [...]	0.986
hscA	mma_0253	mma_1256	mma_0253	Molecular chaperone HscA (Hsc66); Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB.	ABC-type multidrug transport system, ATPase and permease components.	0.552
hscA	mma_0254	mma_1256	mma_0254	Molecular chaperone HscA (Hsc66); Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB.	ABC-type multidrug transport system, ATPase and permease components.	0.503
hscA	mma_0810	mma_1256	mma_0810	Molecular chaperone HscA (Hsc66); Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB.	Uncharacterized conserved protein; Putative ATPase.	0.706
hscA	mma_2582	mma_1256	mma_2582	Molecular chaperone HscA (Hsc66); Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB.	ATPases of the AAA+ class.	0.454
hscA	thrS	mma_1256	mma_1487	Molecular chaperone HscA (Hsc66); Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB.	threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr).	0.510
mma_0251	mma_0252	mma_0251	mma_0252	acyl-CoA dehydrogenase family protein.	Uncharacterized conserved protein; Predicted oxydoreductase.	0.581