Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
mma_0328Dioxygenase (alpha subunit) oxidoreductase protein. (417 aa)    
Predicted Functional Partners:
mma_0729
Uncharacterized conserved protein.
  
     0.686
mma_0327
Transporter of the DMT superfamily.
 
     0.681
ascD
CDP-6-deoxy-delta-3,4-glucoseen reductase.
 
  
 0.635
mma_2181
Uncharacterized conserved protein.
  
     0.631
mma_2964
Exoribonuclease R.
  
     0.629
xseB
Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.625
mma_1107
Uncharacterized conserved protein.
  
     0.601
mma_3218
Uncharacterized conserved protein.
  
     0.590
priB
Primosomal replication protein N; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.
 
     0.571
ispA
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
       0.562
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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