Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
bfdBacterioferritin-associated ferredoxin protein. (71 aa)    
Predicted Functional Partners:
bfr2
Bacterioferritin (cytochrome b1); Iron-storage protein.
  
 
 0.850
tonB
TonB-like protein.
  
  
 0.847
exbB2
Biopolymer transport protein ExbB.
  
  
 0.819
bfr1
Bacterioferritin (cytochrome b1); Iron-storage protein.
  
 
 0.817
exbD3
Biopolymer transport protein ExbD.
  
    0.812
mma_0367
Hypothetical protein.
       0.566
mma_3595
Uncharacterized conserved protein.
  
     0.497
gltB
Glutamate synthase (NADPH) large chain.
     
 0.464
mma_1760
Hypothetical protein; Partially similar to heavy metal sensor kinase.
  
     0.430
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
     0.417
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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