Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mma_0468Signal transduction histidine kinase. (678 aa)    
Predicted Functional Partners:
dctR
Two-components system response regulator.
 
 0.991
mma_0864
Sensory box histidine kinase/response regulator.
 
 
0.937
mma_1668
Uncharacterized conserved protein.
 
 
 0.890
mma_1665
Two-component hybrid sensor and regulator.
 
 
0.880
mma_1892
Sensor histidine kinase/response regulator.
  
 
 0.873
mma_0616
Hybrid two-components system response regulator and sensor kinase.
  
 
 0.858
mma_0708
Hypothetical protein; Similar to PilG.
  
 
 0.858
mma_1658
Signal transduction histidine kinase.
 
 
 
 0.812
mma_2909
Sensory box histidine kinase/response regulator.
 
 
 
 0.772
mma_0960
Hypothetical protein.
   
 
 0.753
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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