Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
xdhC1Xanthine and CO dehydrogenases maturation factor. (349 aa)    
Predicted Functional Partners:
xdhB
Xanthine dehydrogenase, subunit B.
 
  
 0.988
xdhA
Xanthine dehydrogenase, subunit A.
 
  
 0.970
guaD
Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
 
    0.894
mma_0514
Uncharacterized conserved protein; Predicted membrane protein.
 
    0.802
mma_0518
Transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
     0.745
mma_0517
Polysaccharide deacetylase family protein.
 
     0.704
cutM
Carbon monoxide dehydrogenase medium chain.
 
  
 0.680
mma_0768
MobA-related protein.
 
  
 0.661
mma_0776
Carbon-monoxide dehydrogenase small subunit.
 
  
 0.644
coxS
Aerobic-type carbon monoxide dehydrogenase, small subunit.
 
  
 0.576
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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