Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mma_0624Uncharacterized conserved protein. (892 aa)    
Predicted Functional Partners:
mma_0625
Uncharacterized conserved protein; Belongs to the helicase family. UvrD subfamily.
 
   
 0.969
mma_1975
Uncharacterized conserved protein.
  
     0.683
trxA
Thioredoxin; Belongs to the thioredoxin family.
  
    0.578
mma_1974
Uncharacterized conserved protein.
  
     0.569
mma_1857
Uncharacterized conserved protein.
  
     0.551
mma_1973
Iron-sulfur binding protein.
 
     0.527
mma_1079
Uncharacterized conserved protein.
  
     0.506
mma_0456
Uncharacterized conserved protein.
 
     0.503
rho
Rho transcription termination factor; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
       0.495
mma_0675
Uncharacterized conserved protein.
 
     0.494
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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