Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mma_0695Uncharacterized conserved protein. (128 aa)    
Predicted Functional Partners:
mma_2210
Phage-related protein.
  
     0.691
mma_1165
Uncharacterized conserved protein; Putative lipoprotein.
  
    0.681
wrbA
Trp repressor binding protein; Belongs to the WrbA family.
   
    0.637
mma_0142
Uncharacterized conserved protein.
   
    0.628
mma_2598
Conserved domain containing protein.
 
  
 0.623
mma_2612
Uncharacterized conserved protein.
   
    0.611
mma_0693
Acetyltranferase, GNAT family.
       0.601
mma_0694
Uncharacterized conserved protein.
       0.601
mma_3574
Uncharacterized conserved protein.
 
  
 0.596
mma_3573
Uncharacterized conserved protein; Predicted membrane protein.
  
  
 0.592
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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