Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
fpbBiron(III) ABC-type transport system, ATPase component; Belongs to the ABC transporter superfamily. (363 aa)    
Predicted Functional Partners:
fbpC
iron(III) ABC-type transport system permease protein.
 
 0.994
futA
ABC-type Fe3+ transport system, periplasmic component.
 
 
 0.956
potB
Spermidine/putrescine transport system permease protein.
 
 
 0.953
potC
Spermidine/putrescine transport system permease protein.
 
 
 0.939
potD
Spermidine/putrescine transport system substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
 
 0.730
comEC
DNA internalization-related competence protein ComEC/Rec2.
     
 0.508
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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