Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mma_0752Uncharacterized conserved protein. (307 aa)    
Predicted Functional Partners:
mma_0751
Uncharacterized conserved protein.
       0.816
pilX1
PilX type IV pilus assembly protein.
  
     0.718
mma_0753
Uncharacterized conserved protein.
       0.686
mma_2147
Uncharacterized conserved protein.
  
     0.669
mma_3440
Uncharacterized conserved protein.
  
     0.655
mma_1739
Uncharacterized conserved protein.
  
     0.652
mma_0060
Uncharacterized conserved protein.
  
     0.638
mma_1613
Two component sensor histidine kinase.
  
     0.634
mma_0519
Two component sensor histidine kinase.
  
     0.593
mma_0865
Hypothetical protein.
  
     0.575
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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