Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
mma_0771Uncharacterized conserved protein. (126 aa)    
Predicted Functional Partners:
mma_0772
Uncharacterized conserved protein; Predicted amidohydrolase.
 
     0.894
mma_0770
Amidase.
 
    0.861
sucC
succinyl-CoA synthetase beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
  
 0.788
mma_1780
Uncharacterized conserved protein; Putative phage related protein.
  
 0.788
fdhB1
Formate dehydrogenase beta subunit.
  
 
 0.764
lpdA
Dihydrolipoamide dehydrogenase.
  
 
 0.731
mma_0769
Uncharacterized conserved protein.
       0.723
mma_3561
Isochorismatase hydrolase.
 
    0.723
sucA
2-oxoglutarate dehydrogenase E1 component.
  
 
 0.703
mma_0773
Transcriptional regulator, MarR family.
 
     0.684
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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