Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mma_0777Uncharacterized conserved protein. (204 aa)    
Predicted Functional Partners:
mma_0776
Carbon-monoxide dehydrogenase small subunit.
   
 0.977
cutM
Carbon monoxide dehydrogenase medium chain.
 
  
 0.954
cutL
Carbon-monoxide dehydrogenase large subunit.
 
  
 0.951
xdhC3
Xanthine and CO dehydrogenases maturation factor.
 
     0.601
mma_0772
Uncharacterized conserved protein; Predicted amidohydrolase.
 
     0.580
livK3
ABC-type branched-chain amino acid transport systems, periplasmic component.
       0.580
coxS
Aerobic-type carbon monoxide dehydrogenase, small subunit.
   
 0.483
mma_0768
MobA-related protein.
 
     0.482
mma_0769
Uncharacterized conserved protein.
 
     0.466
livH3
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.406
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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