Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
copB1Copper resistance protein B. (331 aa)    
Predicted Functional Partners:
copA1
Copper resistance protein A.
 
  
 0.985
copA2
Copper resistance protein A.
 
  
 0.943
copD1
Copper resistance protein D.
 
   
 0.812
copC1
Copper resistance signal peptide protein C.
 
   
 0.783
copS1
Sensor kinase of copper sensing two-component system; Member of a two-component regulatory system.
 
   
 0.740
mma_1824
Blue copper protein.
  
  
 0.686
copR1
Response regulator of copper sensing system.
 
   
 0.596
copD2
Copper resistance protein D.
 
   
 0.583
copS2
Sensor kinase of copper sensing two-component system; Member of a two-component regulatory system.
 
   
 0.450
zntA2
Cation-translocating P-type ATPase.
     
 0.427
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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