Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mma_0806Uncharacterized conserved protein; Putative transposition protein. (337 aa)    
Predicted Functional Partners:
mma_0807
Uncharacterized conserved protein; Putative transposase.
 
     0.943
mma_0805
Hypothetical protein.
 
     0.941
mma_0808
Hypothetical protein.
       0.781
mma_3034
Transposase.
 
     0.776
mma_3036
Hypothetical protein.
 
     0.723
mma_3033
Uncharacterized conserved protein.
 
     0.565
mma_1168
Uncharacterized conserved protein.
  
     0.564
mma_0804
Hydrolase, HAD superfamily.
       0.532
mma_1781
Putative phage-related protein.
  
     0.478
mma_1824
Blue copper protein.
  
     0.408
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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