Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
mma_0896Short chain dehydrogenase. (278 aa)    
Predicted Functional Partners:
mma_1036
Short-chain dehydrogenase/reductase SDR.
  
     0.607
mma_0895
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.564
mma_3090
3-hydroxyacyl-CoA dehydrogenase oxidoreductase protein.
  
 0.502
mdcH2
Malonyl CoA-ACP transacylase.
 
 
 0.431
mdcH1
Malonyl CoA-ACP transacylase.
 
 
 0.421
fabD
[acyl-carrier-protein] S-malonyltransferase.
 
 
 0.411
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
 
 
 0.407
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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