mma_0912 protein (Janthinobacterium sp. Marseille)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

mma_0912

Uncharacterized conserved protein; Putative oxidoreductase protein. (391 aa)

Predicted Functional Partners:

mma_2794

0.839

acuC

0.814

mma_2859

0.788

chrR

0.649

dnaN

0.632

serA

0.467

mma_0079

0.438

Your Current Organism:

Janthinobacterium sp. Marseille

NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
acuC	mma_0079	mma_0843	mma_0079	Acetoin utilization protein.	Uncharacterized conserved protein.	0.775
acuC	mma_0912	mma_0843	mma_0912	Acetoin utilization protein.	Uncharacterized conserved protein; Putative oxidoreductase protein.	0.814
acuC	mma_2794	mma_0843	mma_2794	Acetoin utilization protein.	Conserved domain containing protein.	0.775
acuC	serA	mma_0843	mma_3685	Acetoin utilization protein.	D-isomer specific 2-hydroxyacid dehydrogenase.	0.430
chrR	mma_0912	mma_0913	mma_0912	Transcription negative regulator ChrR.	Uncharacterized conserved protein; Putative oxidoreductase protein.	0.649
dnaN	mma_0079	mma_0002	mma_0079	DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	Uncharacterized conserved protein.	0.721
dnaN	mma_0912	mma_0002	mma_0912	DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	Uncharacterized conserved protein; Putative oxidoreductase protein.	0.632
dnaN	mma_2794	mma_0002	mma_2794	DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	Conserved domain containing protein.	0.895
mma_0079	acuC	mma_0079	mma_0843	Uncharacterized conserved protein.	Acetoin utilization protein.	0.775
mma_0079	dnaN	mma_0079	mma_0002	Uncharacterized conserved protein.	DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	0.721
mma_0079	mma_0912	mma_0079	mma_0912	Uncharacterized conserved protein.	Uncharacterized conserved protein; Putative oxidoreductase protein.	0.438
mma_0079	mma_2794	mma_0079	mma_2794	Uncharacterized conserved protein.	Conserved domain containing protein.	0.827
mma_0079	mma_2859	mma_0079	mma_2859	Uncharacterized conserved protein.	Histone deacetylase superfamily protein.	0.775
mma_0079	serA	mma_0079	mma_3685	Uncharacterized conserved protein.	D-isomer specific 2-hydroxyacid dehydrogenase.	0.502
mma_0912	acuC	mma_0912	mma_0843	Uncharacterized conserved protein; Putative oxidoreductase protein.	Acetoin utilization protein.	0.814
mma_0912	chrR	mma_0912	mma_0913	Uncharacterized conserved protein; Putative oxidoreductase protein.	Transcription negative regulator ChrR.	0.649
mma_0912	dnaN	mma_0912	mma_0002	Uncharacterized conserved protein; Putative oxidoreductase protein.	DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	0.632
mma_0912	mma_0079	mma_0912	mma_0079	Uncharacterized conserved protein; Putative oxidoreductase protein.	Uncharacterized conserved protein.	0.438
mma_0912	mma_2794	mma_0912	mma_2794	Uncharacterized conserved protein; Putative oxidoreductase protein.	Conserved domain containing protein.	0.839
mma_0912	mma_2859	mma_0912	mma_2859	Uncharacterized conserved protein; Putative oxidoreductase protein.	Histone deacetylase superfamily protein.	0.788