Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mma_0959Transcriptional regulator. (308 aa)    
Predicted Functional Partners:
mma_2360
Transcriptional regulator, AraC family.
  
   0.783
mma_1637
Hypothetical protein; Putative transcriptional regulator.
  
     0.770
mma_2401
Transcriptional regulator, AraC family.
  
     0.770
mma_2358
Transcriptional regulator, AraC family.
  
     0.767
mma_1043
Transcriptional regulator, AraC family.
  
   0.711
mma_1568
Transcriptional regulator, AraC family.
  
   0.519
mma_2320
Transcriptional regulator, AraC family.
  
     0.505
mma_2820
Transcriptional regulator, AraC family.
  
   0.446
mma_3082
Transcriptional regulator, AraC family.
  
   0.440
mma_2348
Transcriptional regulator; Contains an amidase domain and an AraC-type DNA-binding HTH domain.
  
   0.431
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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