Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mma_0962GGDEF domain protein. (239 aa)    
Predicted Functional Partners:
mma_0960
Hypothetical protein.
  
 0.986
mma_1577
Sensory box protein.
 
 0.982
mma_1667
Hypothetical protein; Contains GGDEF domain.
 
    0.979
mma_0856
Diguanylate cyclase.
 
  
 0.978
mma_0653
Signal transduction protein.
  
 0.976
mma_0963
Diguanylate cyclase.
  
 0.959
mma_3133
Response regulator/GGDEF domain protein.
    0.958
mma_0703
Diguanylate cyclase.
 
  
 0.956
mma_2907
Conserved domain containing protein.
 
 0.914
mma_0029
Uncharacterized conserved protein.
 
 
 
 0.904
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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