Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
noxCNADH oxidase. (211 aa)    
Predicted Functional Partners:
mma_1850
Uncharacterized conserved protein.
  
  
 0.706
mma_0976
Uncharacterized conserved protein.
       0.631
mma_1620
ABC transporter inner membrane subunit.
  
  
 0.503
mma_3292
ABC-2 type transporter protein.
  
  
 0.503
nodJ
ABC-2 type transport system permease protein.
  
  
 0.503
mma_0977
Uncharacterized conserved protein.
       0.449
metH
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
  
 0.448
mma_1190
Uncharacterized conserved protein.
  
    0.434
mma_0974
Transcriptional regulator, AraC family.
       0.430
mma_1017
Isochorismatase family protein.
 
  
 0.402
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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