Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mma_0976Uncharacterized conserved protein. (143 aa)    
Predicted Functional Partners:
mma_1230
Uncharacterized conserved protein.
 
     0.648
noxC
NADH oxidase.
       0.631
mma_3331
Epoxide hydrolase.
  
     0.622
mma_0978
Transcriptional regulator, GntR family.
 
    0.602
mma_0977
Uncharacterized conserved protein.
  
   0.579
mma_1033
FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
     0.495
mma_0937
Uncharacterized conserved protein.
  
     0.450
mma_0974
Transcriptional regulator, AraC family.
  
   0.417
mma_0972
Short-chain dehydrogenase/reductase SDR.
 
     0.407
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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