Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mma_0978Transcriptional regulator, GntR family. (469 aa)    
Predicted Functional Partners:
mma_0976
Uncharacterized conserved protein.
 
    0.602
mma_1656
Transcriptional regulator, AraC family.
  
  
 0.528
mma_1914
Transcriptional regulator, AraC family.
  
  
 0.525
mma_1043
Transcriptional regulator, AraC family.
  
  
 0.522
mma_0977
Uncharacterized conserved protein.
  
    0.422
mma_0663
Transcriptional regulator, Cro/CI family.
  
  
 0.413
mma_2390
Transcriptional regulator, Cro/CI family.
  
  
 0.413
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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