mma_1007 protein (Janthinobacterium sp. Marseille)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

mma_1007

Uncharacterized conserved protein. (936 aa)

Predicted Functional Partners:

mma_1008

0.956

mma_1009

0.950

recQ

0.923

polA

0.913

recA

0.886

mma_0162

0.804

topB

0.777

mma_1006

0.773

rrf

0.752

mma_3238

0.705

Your Current Organism:

Janthinobacterium sp. Marseille

NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
mma_0162	mma_1007	mma_0162	mma_1007	5'-3' exonuclease.	Uncharacterized conserved protein.	0.804
mma_0162	polA	mma_0162	mma_0323	5'-3' exonuclease.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.433
mma_0162	recA	mma_0162	mma_2861	5'-3' exonuclease.	RecA recombination protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.922
mma_0162	recQ	mma_0162	mma_2929	5'-3' exonuclease.	ATP-dependent DNA helicase.	0.813
mma_0162	topB	mma_0162	mma_0139	5'-3' exonuclease.	DNA topoisomerase III.	0.400
mma_1006	mma_1007	mma_1006	mma_1007	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.773
mma_1006	mma_1008	mma_1006	mma_1008	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.811
mma_1006	mma_1009	mma_1006	mma_1009	Uncharacterized conserved protein.	Hypothetical protein.	0.811
mma_1007	mma_0162	mma_1007	mma_0162	Uncharacterized conserved protein.	5'-3' exonuclease.	0.804
mma_1007	mma_1006	mma_1007	mma_1006	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.773
mma_1007	mma_1008	mma_1007	mma_1008	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.956
mma_1007	mma_1009	mma_1007	mma_1009	Uncharacterized conserved protein.	Hypothetical protein.	0.950
mma_1007	mma_3238	mma_1007	mma_3238	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.705
mma_1007	polA	mma_1007	mma_0323	Uncharacterized conserved protein.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.913
mma_1007	recA	mma_1007	mma_2861	Uncharacterized conserved protein.	RecA recombination protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.886
mma_1007	recQ	mma_1007	mma_2929	Uncharacterized conserved protein.	ATP-dependent DNA helicase.	0.923
mma_1007	rrf	mma_1007	mma_2055	Uncharacterized conserved protein.	Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.	0.752
mma_1007	topB	mma_1007	mma_0139	Uncharacterized conserved protein.	DNA topoisomerase III.	0.777
mma_1008	mma_1006	mma_1008	mma_1006	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.811
mma_1008	mma_1007	mma_1008	mma_1007	Uncharacterized conserved protein.	Uncharacterized conserved protein.	0.956