STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mma_1331Serine/threonine protein phosphatase. (309 aa)    
Predicted Functional Partners:
mma_1330
Protein kinase.
 
 
 0.953
mma_1148
Serine/threonine protein kinase, Pkn2 family.
 
 
 0.849
lpdA
Dihydrolipoamide dehydrogenase.
  
 0.798
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
     
 0.795
mma_1369
Uncharacterized conserved protein.
  
     0.693
mma_2857
Uncharacterized conserved protein.
 
 
 0.693
fimV
FimV type IV pilus assembly protein.
  
     0.680
mma_1079
Uncharacterized conserved protein.
  
     0.659
mma_3123
Uncharacterized conserved protein.
  
     0.642
pilI
PilI twitching motility protein.
  
     0.628
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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