Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oppBABC-type oligopeptide transport systems, permease component. (316 aa)    
Predicted Functional Partners:
oppC
ABC-type oligopeptide transport systems, permease component.
 
 0.986
oppD
ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 
 0.978
oppE
ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 
 0.978
mma_0260
ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.963
oppA
ABC-type transport system, periplasmic component.
 
 
 0.954
mma_0259
ABC-type transport systems, permease component.
 
 0.944
mma_3518
ABC-type transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 
 0.908
dppD2
Oligopeptide ATP-binding ABC transporter protein; Belongs to the ABC transporter superfamily.
 
 
 0.908
dppA2
ABC-type transport system, periplasmic component.
 
 0.897
mma_0264
ABC-type transport system, periplasmic component.
 
 
 0.894
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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