Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mma_1689Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (285 aa)    
Predicted Functional Partners:
mma_3338
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
   
 0.670
cysB2
Cys regulon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
   
 0.648
mma_2814
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
   
 0.640
mma_1120
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.539
mma_1688
Uncharacterized conserved protein; Ankyrin repeat containing protein.
       0.521
mma_0767
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
   
 0.512
mma_0916
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.495
mma_3660
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
   
 0.467
sodC
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
     
 0.461
mma_1687
Uncharacterized conserved protein; Putative deaminase.
       0.433
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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