torD protein (Janthinobacterium sp. Marseille)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

torD

Cytoplasmic chaperone TorD. (206 aa)

Predicted Functional Partners:

mma_1973

0.965

fdhA2

0.923

mma_1974

0.915

mma_1975

0.907

fdhC

0.901

fdhB2

0.895

fdhD2

0.817

fdhD1

0.771

mma_0185

0.762

tupB

0.758

Your Current Organism:

Janthinobacterium sp. Marseille

NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
fdhA2	fdhB2	mma_1970	mma_1969	Formate dehydrogenase large subunit precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase beta subunit).	0.998
fdhA2	fdhC	mma_1970	mma_1967	Formate dehydrogenase large subunit precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Formate dehydrogenase, cytochrome b556 subunit.	0.996
fdhA2	fdhD1	mma_1970	mma_0405	Formate dehydrogenase large subunit precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Formate dehydrogenase accessory protein fdhD; Required for formate dehydrogenase (FDH) activity. Belongs to the FdhD family.	0.843
fdhA2	fdhD2	mma_1970	mma_1965	Formate dehydrogenase large subunit precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Formate dehydrogenase accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.	0.888
fdhA2	mma_0185	mma_1970	mma_0185	Formate dehydrogenase large subunit precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Uncharacterized conserved protein.	0.709
fdhA2	mma_1973	mma_1970	mma_1973	Formate dehydrogenase large subunit precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Iron-sulfur binding protein.	0.932
fdhA2	mma_1974	mma_1970	mma_1974	Formate dehydrogenase large subunit precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Uncharacterized conserved protein.	0.840
fdhA2	mma_1975	mma_1970	mma_1975	Formate dehydrogenase large subunit precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Uncharacterized conserved protein.	0.813
fdhA2	torD	mma_1970	mma_1972	Formate dehydrogenase large subunit precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Cytoplasmic chaperone TorD.	0.923
fdhA2	tupB	mma_1970	mma_3649	Formate dehydrogenase large subunit precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	ABC-type tungstate transport system, permease component.	0.754
fdhB2	fdhA2	mma_1969	mma_1970	Formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase beta subunit).	Formate dehydrogenase large subunit precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.998
fdhB2	fdhC	mma_1969	mma_1967	Formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase beta subunit).	Formate dehydrogenase, cytochrome b556 subunit.	0.999
fdhB2	fdhD1	mma_1969	mma_0405	Formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase beta subunit).	Formate dehydrogenase accessory protein fdhD; Required for formate dehydrogenase (FDH) activity. Belongs to the FdhD family.	0.760
fdhB2	fdhD2	mma_1969	mma_1965	Formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase beta subunit).	Formate dehydrogenase accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.	0.852
fdhB2	mma_0185	mma_1969	mma_0185	Formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase beta subunit).	Uncharacterized conserved protein.	0.723
fdhB2	mma_1973	mma_1969	mma_1973	Formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase beta subunit).	Iron-sulfur binding protein.	0.937
fdhB2	mma_1974	mma_1969	mma_1974	Formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase beta subunit).	Uncharacterized conserved protein.	0.804
fdhB2	mma_1975	mma_1969	mma_1975	Formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase beta subunit).	Uncharacterized conserved protein.	0.723
fdhB2	torD	mma_1969	mma_1972	Formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase beta subunit).	Cytoplasmic chaperone TorD.	0.895
fdhB2	tupB	mma_1969	mma_3649	Formate dehydrogenase, iron-sulfur subunit (formate dehydrogenase beta subunit).	ABC-type tungstate transport system, permease component.	0.764