yncA protein (Janthinobacterium sp. Marseille)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

yncA

Acetyltransferase. (165 aa)

Predicted Functional Partners:

holB

0.781

tmk

0.775

pilZ

0.761

mltG

0.634

tatD2

0.574

mma_1981

0.559

ureA

0.430

mma_1988

0.423

Your Current Organism:

Janthinobacterium sp. Marseille

NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
holB	mltG	mma_1985	mma_1987	DNA polymerase III delta' subunit.	Uncharacterized conserved protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.	0.790
holB	mma_1981	mma_1985	mma_1981	DNA polymerase III delta' subunit.	Uncharacterized conserved protein; Probable ankyrin repeat harboring signal peptide protein.	0.632
holB	mma_1988	mma_1985	mma_1988	DNA polymerase III delta' subunit.	Glycine cleavage T protein; Belongs to the GcvT family.	0.591
holB	pilZ	mma_1985	mma_1984	DNA polymerase III delta' subunit.	Type IV pilus assembly protein.	0.858
holB	tatD2	mma_1985	mma_1982	DNA polymerase III delta' subunit.	Mg-dependent DNase.	0.726
holB	tmk	mma_1985	mma_1986	DNA polymerase III delta' subunit.	Thymidylate kinase (dTMP kinase); Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.	0.957
holB	yncA	mma_1985	mma_1983	DNA polymerase III delta' subunit.	Acetyltransferase.	0.781
mltG	holB	mma_1987	mma_1985	Uncharacterized conserved protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.	DNA polymerase III delta' subunit.	0.790
mltG	mma_1981	mma_1987	mma_1981	Uncharacterized conserved protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.	Uncharacterized conserved protein; Probable ankyrin repeat harboring signal peptide protein.	0.461
mltG	mma_1988	mma_1987	mma_1988	Uncharacterized conserved protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.	Glycine cleavage T protein; Belongs to the GcvT family.	0.659
mltG	pilZ	mma_1987	mma_1984	Uncharacterized conserved protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.	Type IV pilus assembly protein.	0.707
mltG	tatD2	mma_1987	mma_1982	Uncharacterized conserved protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.	Mg-dependent DNase.	0.828
mltG	tmk	mma_1987	mma_1986	Uncharacterized conserved protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.	Thymidylate kinase (dTMP kinase); Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.	0.818
mltG	yncA	mma_1987	mma_1983	Uncharacterized conserved protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.	Acetyltransferase.	0.634
mma_1981	holB	mma_1981	mma_1985	Uncharacterized conserved protein; Probable ankyrin repeat harboring signal peptide protein.	DNA polymerase III delta' subunit.	0.632
mma_1981	mltG	mma_1981	mma_1987	Uncharacterized conserved protein; Probable ankyrin repeat harboring signal peptide protein.	Uncharacterized conserved protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.	0.461
mma_1981	pilZ	mma_1981	mma_1984	Uncharacterized conserved protein; Probable ankyrin repeat harboring signal peptide protein.	Type IV pilus assembly protein.	0.553
mma_1981	tatD2	mma_1981	mma_1982	Uncharacterized conserved protein; Probable ankyrin repeat harboring signal peptide protein.	Mg-dependent DNase.	0.842
mma_1981	tmk	mma_1981	mma_1986	Uncharacterized conserved protein; Probable ankyrin repeat harboring signal peptide protein.	Thymidylate kinase (dTMP kinase); Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.	0.640
mma_1981	yncA	mma_1981	mma_1983	Uncharacterized conserved protein; Probable ankyrin repeat harboring signal peptide protein.	Acetyltransferase.	0.559