Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mma_2147Uncharacterized conserved protein. (249 aa)    
Predicted Functional Partners:
mma_1739
Uncharacterized conserved protein.
  
     0.772
mma_0865
Hypothetical protein.
  
     0.761
mma_1730
Outer membrane efflux protein.
  
     0.728
mma_1738
Uncharacterized conserved protein; Putative ATPase; Belongs to the AAA ATPase family.
  
     0.725
mma_3690
Uncharacterized conserved protein.
  
     0.699
mma_1953
Uncharacterized conserved protein; Putative RNA methylase.
  
     0.686
mma_1091
Outer membrane hemin/siderophore receptor protein.
  
     0.683
mma_0203
Uncharacterized conserved protein.
  
     0.682
mma_0824
Conserved domain containing protein.
  
     0.677
mma_1523
Uncharacterized conserved protein.
  
     0.677
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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