Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mma_2154Uncharacterized conserved protein. (165 aa)    
Predicted Functional Partners:
rpoE5
RNA polymerase sigma-70 factor, ECF subfamily.
       0.797
mma_2152
Uncharacterized conserved protein.
       0.797
mma_2153
Uncharacterized conserved protein.
     
 0.780
hslR
Heat shock protein 15.
  
    0.692
mma_2181
Uncharacterized conserved protein.
  
     0.681
mma_2852
Uncharacterized conserved protein.
  
     0.603
petC
Cytochrome c1 precursor.
  
     0.542
mma_3146
Uncharacterized conserved protein.
  
     0.535
rlpB
Rare lipoprotein B; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
 
     0.529
mma_0320
Uncharacterized conserved protein; Probable transmembrane protein.
 
    0.528
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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