Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mma_2181Uncharacterized conserved protein. (130 aa)    
Predicted Functional Partners:
glcD3
FAD/FMN-containing dehydrogenase.
       0.829
wrbA
Trp repressor binding protein; Belongs to the WrbA family.
       0.815
mma_0729
Uncharacterized conserved protein.
  
     0.763
mma_3571
Cytochrome c family protein.
  
     0.691
mma_2154
Uncharacterized conserved protein.
  
     0.681
mma_2183
Uncharacterized conserved protein.
       0.675
rbn
Ribonuclease BN transmembrane protein.
  
    0.673
mma_3182
Uncharacterized conserved protein.
  
     0.663
mma_1107
Uncharacterized conserved protein.
  
     0.637
mma_0328
Dioxygenase (alpha subunit) oxidoreductase protein.
  
     0.631
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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