Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mma_2197Uncharacterized conserved protein. (134 aa)    
Predicted Functional Partners:
mma_2198
Uncharacterized conserved protein.
       0.791
mma_2199
Uncharacterized conserved protein.
       0.791
mma_2195
Uncharacterized conserved protein.
       0.773
mma_2196
Hypothetical protein.
       0.773
mma_2200
Hypothetical protein.
       0.714
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.490
mma_2202
Uncharacterized conserved protein.
       0.488
mma_2201
Uncharacterized conserved protein.
       0.486
mma_2203
Uncharacterized conserved protein.
       0.458
mma_2193
Hypothetical protein.
       0.427
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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