Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mma_2201Uncharacterized conserved protein. (238 aa)    
Predicted Functional Partners:
mma_2202
Uncharacterized conserved protein.
       0.773
mma_2203
Uncharacterized conserved protein.
       0.722
mma_2200
Hypothetical protein.
       0.522
mma_2195
Uncharacterized conserved protein.
       0.486
mma_2196
Hypothetical protein.
       0.486
mma_2197
Uncharacterized conserved protein.
       0.486
mma_2198
Uncharacterized conserved protein.
       0.486
mma_2199
Uncharacterized conserved protein.
       0.486
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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