Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mma_2263Uncharacterized conserved protein. (435 aa)    
Predicted Functional Partners:
mma_2267
Polysaccharide transport protein.
  
  
 0.788
mma_2266
Hypothetical protein.
     
 0.778
mma_2264
Uncharacterized conserved protein.
       0.773
mma_2265
Uncharacterized conserved protein.
       0.773
wecB1
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
  
 0.642
mma_2258
Capsular polysaccharide synthesis enzyme.
  
  
 0.571
mma_2262
Nucleoside-diphosphate-sugar epimerases.
  
  
 0.566
wcaJ
Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.549
mma_2277
UDP-glucose 4-epimerase.
  
  
 0.537
rfbD2
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
  
  
 0.533
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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