Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
spsCASpore coat biosynthesis protein; Belongs to the DegT/DnrJ/EryC1 family. (363 aa)    
Predicted Functional Partners:
mma_2279
Uncharacterized conserved protein; Putative acetyltransferase.
  
 0.965
mma_2278
Uncharacterized conserved protein; Putative oxidoreductase.
 
  
 0.941
mma_0631
Capsular polysaccharide biosynthesis glycosyltransferase.
  
  
 0.934
mma_2277
UDP-glucose 4-epimerase.
 
  
 0.912
wbpG
LPS biosynthesis protein WbpG.
 
  
 0.876
mma_2275
UDP-glucose 4-epimerase.
 
  
 0.866
mma_2254
Nucleoside-diphosphate sugar epimerases.
 
  
 0.860
wecE2
DegT/DnrJ/EryC1/StrS aminotransferase family enzyme; Belongs to the DegT/DnrJ/EryC1 family.
 
    
0.835
mma_2268
Hypothetical protein.
 
  
 0.833
mma_2258
Capsular polysaccharide synthesis enzyme.
 
  
 0.826
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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