Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mma_2341Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (304 aa)    
Predicted Functional Partners:
mma_1603
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.635
mma_2342
Hydrolase; Alpha/beta hydrolase fold.
       0.543
leuC2
3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
       0.529
leuD2
3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
       0.529
mma_0257
Cys regulon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.525
mma_1221
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.521
lysR3
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.519
mma_3044
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.510
ribBA
Bifunctional riboflavin biosynthesis protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
 0.480
cysB2
Cys regulon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.458
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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