Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mma_2800Hypothetical protein. (402 aa)    
Predicted Functional Partners:
mma_2801
Transposase.
       0.553
mma_2802
Hypothetical protein; Partially similar to citochrome c-type biogenesis protein CcmF.
       0.443
dsbE1
Cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE.
       0.443
cycL
Cytochrome c-type biogenesis protein CycL; Possible subunit of a heme lyase.
       0.443
cycH
Cytochrome c-type biogenesis protein cycH.
       0.443
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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