Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mma_2802Hypothetical protein; Partially similar to citochrome c-type biogenesis protein CcmF. (148 aa)    
Predicted Functional Partners:
dsbE1
Cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE.
 
  
 0.979
cycH
Cytochrome c-type biogenesis protein cycH.
 
 
 0.968
cycL
Cytochrome c-type biogenesis protein CycL; Possible subunit of a heme lyase.
 
  
 0.965
ccmG
Thiol:disulfide interchange protein dsbE (Cytochrome c biogenesis protein ccmG).
 
  
 0.912
mma_2798
Cytochrome c-type biogenesis protein CcmF, N-term.
 
     0.885
mma_0938
Hypothetical protein; Similar to cytochrome c-type biogenesis protein.
 
 
 0.877
ccmE
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
 
 
 0.860
ccmH
Cytochrome c-type biogenesis protein CcmH; Possible subunit of a heme lyase.
 
  
 0.854
ccmC
Heme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.
 
  
 0.817
ccmB
Heme ABC export system, permease protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.
 
  
 0.811
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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