cynT2 protein (Janthinobacterium sp. Marseille)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

cynT2

Carbonic anhydrase. (222 aa)

Predicted Functional Partners:

cynT1

0.912

paaY

0.739

mma_2879

0.603

sulP1

0.503

mma_2881

0.496

dnaJ

0.484

guaB

0.417

Your Current Organism:

Janthinobacterium sp. Marseille

NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cynT1	cynT2	mma_2596	mma_2880	Carbonic anhydrase.	Carbonic anhydrase.	0.912
cynT1	guaB	mma_2596	mma_2034	Carbonic anhydrase.	Inosine-5'-monophosphate dehydrogenase oxidoreductase protein; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.	0.417
cynT1	paaY	mma_2596	mma_1273	Carbonic anhydrase.	Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily.	0.739
cynT1	sulP1	mma_2596	mma_1109	Carbonic anhydrase.	Sulfate permease, SulP family.	0.861
cynT2	cynT1	mma_2880	mma_2596	Carbonic anhydrase.	Carbonic anhydrase.	0.912
cynT2	dnaJ	mma_2880	mma_2882	Carbonic anhydrase.	Molecular chaperone DnaJ (heat shock protein); Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent inter [...]	0.484
cynT2	guaB	mma_2880	mma_2034	Carbonic anhydrase.	Inosine-5'-monophosphate dehydrogenase oxidoreductase protein; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.	0.417
cynT2	mma_2879	mma_2880	mma_2879	Carbonic anhydrase.	Uncharacterized conserved protein; Putative zinc metallopeptidase.	0.603
cynT2	mma_2881	mma_2880	mma_2881	Carbonic anhydrase.	Uncharacterized conserved protein.	0.496
cynT2	paaY	mma_2880	mma_1273	Carbonic anhydrase.	Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily.	0.739
cynT2	sulP1	mma_2880	mma_1109	Carbonic anhydrase.	Sulfate permease, SulP family.	0.503
dnaJ	cynT2	mma_2882	mma_2880	Molecular chaperone DnaJ (heat shock protein); Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent inter [...]	Carbonic anhydrase.	0.484
dnaJ	mma_2881	mma_2882	mma_2881	Molecular chaperone DnaJ (heat shock protein); Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent inter [...]	Uncharacterized conserved protein.	0.720
guaB	cynT1	mma_2034	mma_2596	Inosine-5'-monophosphate dehydrogenase oxidoreductase protein; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.	Carbonic anhydrase.	0.417
guaB	cynT2	mma_2034	mma_2880	Inosine-5'-monophosphate dehydrogenase oxidoreductase protein; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.	Carbonic anhydrase.	0.417
mma_2879	cynT2	mma_2879	mma_2880	Uncharacterized conserved protein; Putative zinc metallopeptidase.	Carbonic anhydrase.	0.603
mma_2881	cynT2	mma_2881	mma_2880	Uncharacterized conserved protein.	Carbonic anhydrase.	0.496
mma_2881	dnaJ	mma_2881	mma_2882	Uncharacterized conserved protein.	Molecular chaperone DnaJ (heat shock protein); Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent inter [...]	0.720
paaY	cynT1	mma_1273	mma_2596	Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily.	Carbonic anhydrase.	0.739
paaY	cynT2	mma_1273	mma_2880	Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily.	Carbonic anhydrase.	0.739