Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
exbB5MotA/TolQ/ExbB proton channel family protein. (230 aa)    
Predicted Functional Partners:
exbD6
Biopolymer transport protein ExbD.
 
 
 0.965
exbD1
Biopolymer transport protein ExbD.
 
 
 0.882
exbD3
Biopolymer transport protein ExbD.
 
 
 0.882
exbD2
Biopolymer transport protein ExbD.
 
 
 0.871
tolR
Biopolymer transport protein TolR.
 
 
 0.835
tonB
TonB-like protein.
 
 
 0.818
exbD4
ExbD transport protein.
 
 
 0.801
mma_2895
Hypothetical protein.
       0.723
mma_0244
TonB-like protein.
 
 
 0.683
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
       0.639
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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