mma_2895 protein (Janthinobacterium sp. Marseille)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

mma_2895

Hypothetical protein. (108 aa)

Predicted Functional Partners:

exbD6

0.836

mma_2572

0.779

exbB5

0.723

dapB

0.681

bamE

0.644

leuS

0.568

fur

0.460

rlpB

0.453

holA

0.450

Your Current Organism:

Janthinobacterium sp. Marseille

NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
bamE	dapB	mma_2890	mma_2892	Uncharacterized conserved protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.	0.792
bamE	exbB5	mma_2890	mma_2893	Uncharacterized conserved protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	MotA/TolQ/ExbB proton channel family protein.	0.596
bamE	exbD6	mma_2890	mma_2894	Uncharacterized conserved protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Biopolymer transport protein ExbD.	0.576
bamE	fur	mma_2890	mma_2891	Uncharacterized conserved protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family.	0.795
bamE	holA	mma_2890	mma_2898	Uncharacterized conserved protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	DNA polymerase III delta subunit.	0.829
bamE	leuS	mma_2890	mma_2896	Uncharacterized conserved protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.567
bamE	mma_2895	mma_2890	mma_2895	Uncharacterized conserved protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Hypothetical protein.	0.644
bamE	rlpB	mma_2890	mma_2897	Uncharacterized conserved protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	Rare lipoprotein B; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.	0.910
dapB	bamE	mma_2892	mma_2890	Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.	Uncharacterized conserved protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.792
dapB	exbB5	mma_2892	mma_2893	Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.	MotA/TolQ/ExbB proton channel family protein.	0.639
dapB	exbD6	mma_2892	mma_2894	Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.	Biopolymer transport protein ExbD.	0.631
dapB	fur	mma_2892	mma_2891	Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.	Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family.	0.659
dapB	holA	mma_2892	mma_2898	Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.	DNA polymerase III delta subunit.	0.522
dapB	leuS	mma_2892	mma_2896	Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.	leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.691
dapB	mma_2895	mma_2892	mma_2895	Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.	Hypothetical protein.	0.681
dapB	rlpB	mma_2892	mma_2897	Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.	Rare lipoprotein B; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.	0.522
exbB5	bamE	mma_2893	mma_2890	MotA/TolQ/ExbB proton channel family protein.	Uncharacterized conserved protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.	0.596
exbB5	dapB	mma_2893	mma_2892	MotA/TolQ/ExbB proton channel family protein.	Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.	0.639
exbB5	exbD6	mma_2893	mma_2894	MotA/TolQ/ExbB proton channel family protein.	Biopolymer transport protein ExbD.	0.965
exbB5	fur	mma_2893	mma_2891	MotA/TolQ/ExbB proton channel family protein.	Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family.	0.459