STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mma_3050Outer membrane cation efflux system protein. (404 aa)    
Predicted Functional Partners:
mma_3051
Uncharacterized conserved protein.
 
   0.934
mexC
RND multidrug efflux membrane fusion protein MexC precursor.
 
   0.928
mma_3054
Uncharacterized conserved protein.
 
     0.875
mma_3053
Heavy metal efflux pump, CzcA family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
    0.817
macB
Macrolide ABC efllux protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.676
mma_3479
ATP-binding/permease fusion ABC transporter.
  
 
 0.676
emrA
Multidrug resistance protein A, emrA.
  
 
 0.535
mma_3055
Uncharacterized conserved protein.
 
     0.519
mma_3049
Hypothetical protein.
       0.513
mma_1388
HlyD family secretion protein, type I secretion pathway.
  
 
 0.487
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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