Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
mma_3063Two-component response regulator. (239 aa)    
Predicted Functional Partners:
mma_3062
Two-component sensor kinase.
 
 0.995
mma_2921
Two-components system response regulator.
  
 
 0.798
mma_3512
Two-component sensor histidine kinase.
 
 
 0.751
czcS
Heavy metal sensor kinase; Member of a two-component regulatory system.
  
   0.736
mma_2864
Sensor histidine kinase transcription regulator protein.
  
 
 0.729
mma_3229
Two component sensor histidine kinase protein.
  
   0.723
colS1
Two-component system sensor histidine kinase ColS.
  
   0.714
colS2
Two-component system, sensor protein.
  
   0.707
mma_0024
Two-component system sensor protein; Member of a two-component regulatory system.
  
   0.702
copS2
Sensor kinase of copper sensing two-component system; Member of a two-component regulatory system.
  
   0.676
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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