Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mma_3085ABC-type nitrate/sulfonate/bicarbonate transport system, permease component. (276 aa)    
Predicted Functional Partners:
mma_3084
Sulfonate/nitrate transport system ATP-binding protein.
 
 
 0.969
mma_3086
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component.
 
 
 0.942
mma_3537
ABC-type transport system, ATPase component.
 
 
 0.861
nasD
Nitrate transport system ATP-binding protein.
 
 
 0.857
mma_2618
Sulfonate/nitrate transport system ATP-binding protein.
 
 
 0.849
tauB
Sulfonate/nitrate transport system ATP-binding protein.
 
 
 0.837
mma_2616
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component.
 
 
 0.773
mma_2619
Sulfonate/nitrate transport system substrate-binding protein.
 
 
 0.769
ssuA2
Sulfonate ABC transporter, periplasmic sulfonate-binding protein SsuA.
 
 
 0.766
ssuA1
Sulfonate ABC transporter, periplasmic sulfonate-binding protein SsuA.
 
 
 0.765
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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