Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mma_3183Hypothetical protein. (507 aa)    
Predicted Functional Partners:
mma_3184
ABC-type branched-chain amino acid transport systems, periplasmic component.
 
     0.773
mma_3182
Uncharacterized conserved protein.
 
     0.758
mma_0590
Uncharacterized conserved protein.
  
     0.743
mma_3185
Uncharacterized conserved protein.
 
    
0.713
mma_2571
Uncharacterized conserved protein.
  
     0.689
mma_3153
Uncharacterized conserved protein; Putative membrane protein.
  
     0.683
ftsK
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
    
 
 0.680
mma_3245
Uncharacterized conserved protein; Putative transmembrane protein.
  
     0.680
mma_2153
Uncharacterized conserved protein.
  
     0.659
mma_0284
Uncharacterized conserved protein.
  
     0.657
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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