Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
mma_3229Two component sensor histidine kinase protein. (427 aa)    
Predicted Functional Partners:
ompR7
Transcriptional regulatory protein OmpR.
 
   0.961
mma_0858
Hypothetical protein; Putative response regulator.
 
 
 0.817
pilH
Twitching motility two-component response regulator transcription regulator protein.
  
   0.801
phoB
Phosphate regulon two-component response regulator.
  
   0.774
ompR6
Two components system response regulator.
  
   0.771
risA
Oxidative stress resistance two-components response regulator.
  
   0.765
ompR8
Two components system response regulator.
  
   0.763
ompR5
Two-components system response regulator.
  
   0.727
mma_3063
Two-component response regulator.
  
   0.723
ompR3
Two-components system response regulator.
  
   0.718
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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