Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
pilY1Type IV fimbrial biogenesis protein PilY1. (1249 aa)    
Predicted Functional Partners:
pilE3
Type IV pilus biogenesis protein PilE.
 
  
 0.946
mma_3359
Type IV pilus assembly related protein.
 
  
 0.936
pilV
Conserved domain containing protein.
  
  
 0.918
pilW2
Type IV pilus assembly protein PilW.
  
  
 0.902
pilX2
Type IV pilus assembly protein PilX.
  
  
 0.893
pilW1
PilW type IV pilus assembly protein.
 
  
 0.882
pilX1
PilX type IV pilus assembly protein.
 
  
 0.868
pilQ
PilQ type IV pilus assembly protein.
 
   
 0.866
mma_2439
Uncharacterized conserved protein.
 
  
 0.831
pilN
PilN type IV pilus assembly protein.
 
  
 0.823
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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