Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilVConserved domain containing protein. (146 aa)    
Predicted Functional Partners:
pilW2
Type IV pilus assembly protein PilW.
  
  
 0.951
pilE3
Type IV pilus biogenesis protein PilE.
  
  
 0.924
pilY1
Type IV fimbrial biogenesis protein PilY1.
  
  
 0.918
pilX2
Type IV pilus assembly protein PilX.
  
  
 0.912
mma_3359
Type IV pilus assembly related protein.
  
  
 0.882
pilX1
PilX type IV pilus assembly protein.
  
  
 0.804
pilW1
PilW type IV pilus assembly protein.
  
  
 0.759
pilE1
PilE type IV pilus assembly protein.
  
  
 0.683
mma_3354
tonB like protein.
       0.560
mma_3361
Probable enoyl(3-hydroxyisobutyryl)-coenzyme A hydratase protein.
       0.532
Your Current Organism:
Janthinobacterium sp. Marseille
NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis
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