fecI16 protein (Janthinobacterium sp. Marseille)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

fecI16

RNA polymerase sigma-70 factor, ECF subfamily. (184 aa)

Predicted Functional Partners:

fecR16

0.955

fecR15

0.861

fecR6

0.810

fecR8

0.810

fecR9

0.810

fecR13

0.810

fecR1

0.808

fecR14

0.808

fecR2

0.807

fecR3

0.807

Your Current Organism:

Janthinobacterium sp. Marseille

NCBI taxonomy Id: 375286
Other names: J. sp. Marseille, Minibacterium massiliensis

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
fecI16	fecR1	mma_3497	mma_0755	RNA polymerase sigma-70 factor, ECF subfamily.	Fe2+-dicitrate sensor, membrane component.	0.808
fecI16	fecR13	mma_3497	mma_2587	RNA polymerase sigma-70 factor, ECF subfamily.	Fe2+-dicitrate sensor, membrane component.	0.810
fecI16	fecR14	mma_3497	mma_3484	RNA polymerase sigma-70 factor, ECF subfamily.	Fe2+-dicitrate sensor, membrane component.	0.808
fecI16	fecR15	mma_3497	mma_3492	RNA polymerase sigma-70 factor, ECF subfamily.	Fe2+-dicitrate sensor, membrane component.	0.861
fecI16	fecR16	mma_3497	mma_3496	RNA polymerase sigma-70 factor, ECF subfamily.	Fe2+-dicitrate sensor, membrane component.	0.955
fecI16	fecR2	mma_3497	mma_1160	RNA polymerase sigma-70 factor, ECF subfamily.	Fe2+-dicitrate sensor, membrane component.	0.807
fecI16	fecR3	mma_3497	mma_1214	RNA polymerase sigma-70 factor, ECF subfamily.	Fe2+-dicitrate sensor, membrane component.	0.807
fecI16	fecR6	mma_3497	mma_2023	RNA polymerase sigma-70 factor, ECF subfamily.	Fe2+-dicitrate sensor, membrane component.	0.810
fecI16	fecR8	mma_3497	mma_2029	RNA polymerase sigma-70 factor, ECF subfamily.	Fe2+-dicitrate sensor, membrane component.	0.810
fecI16	fecR9	mma_3497	mma_2351	RNA polymerase sigma-70 factor, ECF subfamily.	Fe2+-dicitrate sensor, membrane component.	0.810
fecR1	fecI16	mma_0755	mma_3497	Fe2+-dicitrate sensor, membrane component.	RNA polymerase sigma-70 factor, ECF subfamily.	0.808
fecR13	fecI16	mma_2587	mma_3497	Fe2+-dicitrate sensor, membrane component.	RNA polymerase sigma-70 factor, ECF subfamily.	0.810
fecR14	fecI16	mma_3484	mma_3497	Fe2+-dicitrate sensor, membrane component.	RNA polymerase sigma-70 factor, ECF subfamily.	0.808
fecR15	fecI16	mma_3492	mma_3497	Fe2+-dicitrate sensor, membrane component.	RNA polymerase sigma-70 factor, ECF subfamily.	0.861
fecR16	fecI16	mma_3496	mma_3497	Fe2+-dicitrate sensor, membrane component.	RNA polymerase sigma-70 factor, ECF subfamily.	0.955
fecR2	fecI16	mma_1160	mma_3497	Fe2+-dicitrate sensor, membrane component.	RNA polymerase sigma-70 factor, ECF subfamily.	0.807
fecR3	fecI16	mma_1214	mma_3497	Fe2+-dicitrate sensor, membrane component.	RNA polymerase sigma-70 factor, ECF subfamily.	0.807
fecR6	fecI16	mma_2023	mma_3497	Fe2+-dicitrate sensor, membrane component.	RNA polymerase sigma-70 factor, ECF subfamily.	0.810
fecR8	fecI16	mma_2029	mma_3497	Fe2+-dicitrate sensor, membrane component.	RNA polymerase sigma-70 factor, ECF subfamily.	0.810
fecR9	fecI16	mma_2351	mma_3497	Fe2+-dicitrate sensor, membrane component.	RNA polymerase sigma-70 factor, ECF subfamily.	0.810